org.jmol.adapter.readers.cif
Date: 2019-10-22

# Package org.jmol.adapter.readers.cif

- Class Summary
  Class | Description
  --- | ---
  Cif2DataParser | Fully implemented 2016.12.1 see http://journals.iucr.org/j/issues/2016/01/00/aj5269/index.html Will deliver JSON versions of the data while file reading and Java List/Map structures when called by x = getProperty("cifInfo", filename) Validated using the test-data suite by John Bollinger (John.Bollinger@stjude.org) found at https://github.com/COMCIFS/cif_api
  Cif2Reader | Preliminary Cif2 reader.
  CifReader | A true line-free CIF file reader for CIF files.
  MMCifReader | mmCIF files are recognized prior to class creation.
  MMCifValidationParser |
  MMTFReader | JmolData RCSB MMTF (macromolecular transmission format) file reader see https://github.com/rcsb/mmtf/blob/master/spec.md full specification Version: v0.2+dev (as of 2016.08.08) is implemented,including: reading atoms, bonds, and DSSP 1.0 secondary structure load =1f88.mmtf filter "DSSP1" [Note that the filter "DSSP1" is required, since mmtf included DSSP 1.0 calculations, while the standard for Jmol itself is DSSP 2.0.
  MSCifParser |
  MSRdr | generalized modulated structure reader class for CIF and Jana -- includes Fourier, Crenel, Sawtooth; displacement, occupancy, and Uij -- handles up to 6 modulation wave vectors -- commensurate and incommensurate, including composites -- not handling _cell_commen_t_section_1
  Subsystem |